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Cistrome

Cistrome

Name: Cistrome

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The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale, also known as the in vivo genome-wide location of  Cistrome DB - Cistrome Cancer - Chromatin Regulator Cistrome - BETA. This installation of cistrome(Galaxy instance) has been configured such that only users who are logged in may use it. If you don't already have an account, you. Please support the continued development and maintenance of Cistrome DB by leaving your testimonial. GO! Containing word(s). Search. Options. Show run.

The cistrome refers to "the set of cis-acting targets of a trans-acting factor on a genome-wide scale, also known as the in vivo genome-wide location of. Cistrome: an integrative platform for transcriptional regulation studies. Tao Liu†,; Jorge A Ortiz†,; Len Taing,; Clifford A Meyer,; Bernett Lee,; Yong Zhang. 26 Oct Chromatin immunoprecipitation, DNase I hypersensitivity and transposase- accessibility assays combined with high-throughput sequencing.

cistrome (plural cistromes). (microbiology) The set of DNA segments (cis) of a transacting factor on a genome scale. (microbiology) A map of all locations. The Cistrome Analysis Pipeline has the standard Galaxy tools, plus 29 additional ChIP-chip and ChIP-seq specific tools, including preliminary peak calling and. 26 Sep The ChIP-seq pipeline “Cistrome” integrated into UGENE allows one to do the following analysis steps: peak calling and annotating, motif. 6 Sep Cistrome is defined as the set of cis-acting targets of a trans-acting factor on a genome scale. Our Cistrome project is to integrate ChIP-chip/seq. 8 Jun Aldosterone exerts its effects mainly by activating the mineralocorticoid receptor ( MR), a transcription factor that regulates gene expression.

19 May 6Present address: Centre for AgriBioscience, School of Life Science, Department of Animal, Plant, and Soil Science, La Trobe University. conda install. linux vb1; osx vb1. To install this package with conda run: conda install -c bioconda cistrome-ceas. Figure 5. Growth factor ERα cistrome relates to poor-outcome expression signatures in breast tumors. (A) Oncomine Concepts Map analysis reveals significant. A cistrome is defined as the set of cis-acting targets of a trans-acting factor on a genome scale. The Cistrome project integrates ChIP-chip/seq data for a cistrome .

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